Conferences, posters and publications

Oral communications and lectures

NETTAB 2014, From structural bioinformatics to integrative systems biology

15-17 October 2014, Turin, Italy
From genome to molecular interactions, a plug-in to map next generation sequencing data to molecular interactions and their structures with the Integrated Genome Browser.

BITS2014, Eleventh Annual Meeting of the Bioinformatics Italian Society

26-28 February 2014, Roma, Italy
From genome to molecular interactions, a plug-in to map next generation sequencing data to molecular interactions and their structures with the Integrated Genome Browser.

1° Bioinformatics, Computational Biology and System Biology Lombardy Day (BioLom 2013)

27 November 2013, Milan, Italy
Enabling analytical approaches in modern genome browsers: A plugin for mapping and visualizing mutations in protein-protein interaction structures.

NGS Milano Meeting 2013

25 September 2013, Milan, Italy
From genome to molecules, mapping NGS data to the structures of molecular interaction to identify disease causing mutations.

Sysbiohealth Symposium 2008; Medicine and diseases: a system biology perspective

24-25 November 2008, Bologna, Italy
Tutorial on Protein-protein interactions.

ESF Workshop on Development of standard compliant tools for molecular interaction data management

16-19 November 2008, European Bioinformatics Institute, Cambridge, UK
The PSI-MI 2.5 standard

First ENFIN Advanced Course on methods for protein function prediction

1-3 September 2008, European Bioinformatics Institute, Cambridge, UK
Integration of heterogeneous experimental data.

SYMBIONIC course 2004 on Computational System Biology of the Neuronal Cell

6-10 December 2004, SISSA-ICTP, Trieste, Italy
Standards for representing protein -protein interactions. Tutorial on protein interaction databases.


Publications

*: should be regarded as joint First Authors.

  • PSICQUIC and PSISCORE: accessing and scoring molecular interactions.
    Aranda B, Blankenburg H, Kerrien S, Brinkman FS, Ceol A, Chautard E, Dana JM, De Las Rivas J, Dumousseau M, Galeota E, Gaulton A, Goll J, Hancock RE, Isserlin R, Jimenez RC, Kerssemakers J, Khadake J, Lynn DJ, Michaut M, O’Kelly G, Ono K, Orchard S, Prieto C, Razick S, Rigina O, Salwinski L, Simonovic M, Velankar S, Winter A, Wu G, Bader GD, Cesareni G, Donaldson IM, Eisenberg D, Kleywegt GJ, Overington J, Ricard-Blum S, Tyers M, Albrecht M, Hermjakob H
    Nat Methods [2011, 8(7):528-529]
  • The minimum information required for reporting a molecular interaction experiment (MIMIx).
    Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader GD, Vidal M, Cusick ME, Gerstein M, Gavin AC, Superti-Furga G, Greenblatt J, Bader J, Uetz P, Tyers M, Legrain P, Fields S, Mulder N, Gilson M, Niepmann M, Burgoon L, De Las Rivas J, Prieto C, Perreau VM, Hogue C, Mewes HW, Apweiler R, Xenarios I, Eisenberg D, Cesareni G, Hermjakob H
    Nat Biotechnol [2007, 25(8):894-898]
  • MINT: the Molecular INTeraction database.
    Chatr-aryamontri A, Ceol A*, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G
    Nucleic Acids Res [2007, 35(database issue):d572-4]
  • Broadening the horizon–level 2.5 of the HUPO-PSI format for molecular interactions.
    Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M, Stümpflen V, Salwinski L, Nerothin J, Cerami E, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R, Hermjakob H
    BMC Biol [2007, 5:44]